Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs57539446 chr17:30269012 C/T 3.74E-12 279 26.6 24.67 10.37 KM Plot
KIRP rs57564009 chr1:26557618 A/T 5.02E-5 287 25.7 27.43 13.17 KM Plot
KIRP rs57569697 chr16:51373150 TCTC/T 5.28E-5 287 26.28 18.9 10.73 KM Plot
KIRP rs576462 chr1:231544607 C/T 0.000196 284 19.9 30.23 25.23 KM Plot
KIRP rs576658 chr1:147793065 T/C 1.83E-5 288 5.83 30.72 25.55 KM Plot
KIRP rs5768683 chr22:48897010 G/T 5.02E-5 280 26.48 25.63 4.07 KM Plot
KIRP rs5775774 chr1:84531447 A/AT 1.86E-5 284 13.63 26.63 25.93 KM Plot
KIRP rs57924303 chr4:16187142 C/T 1.11E-5 280 25.23 30.38 14.27 KM Plot
KIRP rs57964319 chr11:47146599 C/T 7.35E-12 288 25.4 31.87 10.82 KM Plot
KIRP rs5796761 chr12:18818115 T/TA 0 286 25.67 25.5 6.7 KM Plot
KIRP rs58030783 chr18:32849424 C/CAT 7.89E-5 285 10.7 29.03 25.53 KM Plot
KIRP rs58076660 chr11:72441495 G/A 9.16E-6 285 25.82 23.6 6.28 KM Plot
KIRP rs58118007 chr10:74953040 T/A 1.14E-14 287 26.37 23.63 5.6 KM Plot
KIRP rs581237 chr17:30296194 A/G 2.52E-12 283 26.6 24.3 10.37 KM Plot
KIRP rs58135052 chr19:16534910 G/A 2.44E-15 284 26.1 21.43 8.08 KM Plot